For me, the characteristic features of a mystlcial and therefore untrustworthy, theory are that it is not refutable, that it appeals to authority, that it relies heavily on anecdote, that is makes a virtue of consensus (look how many people believe like me!), and that it takes the high moral ground. You will notice that this applies to most religions.
--Matt Ridley in Evolution of Everything; How New Ideas Emerge, page 270
Among regular people there seems to be precious little understanding of what exactly the method is, and what it does and does not accomplish. This ignorance about the process of science contributes to claims that scientists are just greedy a-holes exploiting the government for profit. This attitude rises from a complete lack of exposure to real scientists and their way of being. It is not fair to scientists. Scientists, for the most part, are trying to figure out how the world works so that we can use that information to make our lives and our world better. They are not politicians, they are curious people who sought education enough to know what questions to ask and how to test them. They care passionately about making the world a better place.
The first step of DOING science is to ask a question about the world. The question doesn't have to be complicated, it just has to reach into the unknown. Once you have your question, it is a good idea to snoop around and see if anyone else has already answered it, or tried. Learn everything you can about the variables that might influence the answer. Once you've studied up on it, you're qualified to make a guess---a "theory" in science terms---as to what the answer might be, and why. A true scientist knows that a theory is just a theory--it has to be tested repeatedly by people who agree and by people who disagree. A true scientist is not heartbroken when the data shows that his theory was bunk. That is useful information. Time to come up with a new theory.
This testing is the experiment. There can be many different ways to test any one theory. The most useful experiments are often the simplest, changing only one variable between two groups of test subjects. Scientist use many different methods to approach the same question, and this diversity adds richness to the picture painted by the results. We might know that B follows A three quarters of the time, but until we know WHY they are correlated, and what other variables contribute to the correlation, we do not understand. A--->B at a rate of 75% is enough to know that there is a connection, but it is not enough to say that A causes B. We don't know that. Something else could be causing it. We take our results from that experiment, share them with the other scientific thinkers in the world, and update our theory if possible. Usually an experiment brings up new questions, which indicate new possible experiments that need to be done to understand.
So science does NOT discover causality. It discovers correlations. Correlations can have multiple contributing variables so more experiments are needed. Sometimes someone repeats the same experiment and gets the opposite result. This is evidence that there was something operating in the system that was not being measured. This is a sign that the original theory was based in deeper ignorance than perhaps we thought at first. This is hard to admit, even for scientists.
Just because an experiment gets peer reviewed and published in an journal does not make it the truth. There are many false conclusions that have been published. Egostists who call themselves scientists publish more books than all the real scientists put together. Real scientists tent to be intraverts who'd rather stay out of the limelight and just keep digging into these interesting questions. Every experient needs to be repeated from a variety of angles before a result is accepted as Truth.
So there is a basic primer on the scientific method. My area is mostly medicine, though I am fascinated by all science. Medical science is more than double blind placebo controlled studies. It includes the careful evaluation of population outcomes and biochemical mechanisms and every other factor that could influence the answer. Science is a process of asking questions and trying to figure out if our theories about the answers are right or not. A theory is just a theory.
Evolution, by the way, has been proven in so many ways by so many different experiments, that it is not a theory anymore.